miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|73719002|gb|DT346363.1|DT346363 TTTTTTTTTTTTTTTGAGGAAATAAGTTTTATTAAAATGCAATTGTAGTGATTATTGCATCACAAGCATGTTGTGAGAAC
ACAATCAAATGAAGAATTCATAGTGTAATGAATAAAATAGCACTTAACAGAACTCAGTTGGTCACATGACAGCTTAGAAA
AAAACAGGATGTAATAAAATAGGCCATGATGGAGATATCAATCCAAAGTGAGTCTTTCTAATTCAGCAGTAGCTGTCCGT
GAAGCAGGCGGTGTGTCGGACTTCTGGCCCTCCCCAACAGATTTAAAGTGCTGTGAGTTTTTGAATTCAGAGTAGAGAGT
GAACAGGACGTGAAGTGAGTGAATTCGGTTCTTGTACACAGGGATGTCCAGGATTCCACAAATAATGTCAACATAATCAG
CCAAATCACAGTCAATGTCTGCTGTGGGGAGATTCACCTTCCCCAAAAGCTCCTCAAATTCAGCCGGCCACTCTTGCATC
AGGCTGTCGATGTCTGGCATGGGTCTCGTGTAGTGTACGGTAGCTGGAGGTTTGGACCGGTGCAGCTCAGTAATGCTCTC
GATCCAGTTGTCTATGGCTTTGGGGTTCTTCTCTGGGTTTTCGATGCTCTTAACTTTCACTTCAGCGACATTGTGTTGTT
TGCTGTTCTCTGACAGCCACAAGGAAAGCACTGTTGGGTCTGACTGTTTAACACATGGCTCATCTAGAACGAGGAGACCA
AGATTGTCAGCCTTCCCATCTGGCCGTGGTACTTTGAGGAAAGCATCAATGTCCCCCACAGCTGGGATGAAATCAGGGAT
AAAGGGCTTCAGTTTG




Most similar to sp|A7MBP4|IFT46_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A7MBP4|IFT46_DANRE Intraflagellar transport protein 46 homolog
           OS=Danio rerio GN=ift46 PE=2 SV=2
          Length = 384

 Score =  402 bits (1034), Expect = e-111
 Identities = 193/205 (94%), Positives = 200/205 (97%)
 Frame = -2

Query: 815 KLKPFIPDFIPAVGDIDAFLKVPRPDGKADNLGLLVLDEPCVKQSDPTVLSLWLSENSKQ 636
           KLKPFIPDFIPAVGDIDAFLKVPRPDGK DNLGLLVLDEPC KQSDPTVLSLWLSENSKQ
Sbjct: 180 KLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVLDEPCTKQSDPTVLSLWLSENSKQ 239

Query: 635 HNVAEVKVKSIENPEKNPKAIDNWIESITELHRSKPPATVHYTRPMPDIDSLMQEWPAEF 456
           HNV EVKVKSIENPEKNPKAIDNWIESI+ELHRSKPPATVHYTRPMPDIDSLMQEWP+EF
Sbjct: 240 HNVTEVKVKSIENPEKNPKAIDNWIESISELHRSKPPATVHYTRPMPDIDSLMQEWPSEF 299

Query: 455 EELLGKVNLPTADIDCDLADYVDIICGILDIPVYKNRIHSLHVLFTLYSEFKNSQHFKSV 276
           EELLGKVNLPTADIDCDLA+YVD+ICGILDIPVYKNRIHSLHVLFTLYSEFKNSQHFKS 
Sbjct: 300 EELLGKVNLPTADIDCDLAEYVDMICGILDIPVYKNRIHSLHVLFTLYSEFKNSQHFKSA 359

Query: 275 GEGQKSDTPPASRTATAELERLTLD 201
            +GQKSDTPPASR+ATAE+ERLTLD
Sbjct: 360 TDGQKSDTPPASRSATAEIERLTLD 384